rs29446323 SNP Detail

Summary

• ID
  rs29446323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69301199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTACCAATC CCTGGGACGC GTACAACGCT AAACTGTGGT
  CAAGTGCAAC CCAACCTGAG TGCCCCAATC AAGCCCTGCG GGGGTAGAGA AACCAGTCAT
  R
  GACAAACGGC AGCTCGGGGT ACCAGATGTC AAAGAAGCAG ATCCCGGCTA AGGAAGCGGT
  GCCCAGAACT CTGCTAGTTA CCAGGAAATG CAGCTTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38811608	mCV22780436	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132355585	ENSMUSSNP4324535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss323729422	CHEV_11_69223875	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29446323					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69301199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	945 bp upstream
Gm72933	predicted gene, 72933	476 bp upstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	390 bp downstream
Rr402670	regulatory region 402670	1477 bp downstream
Rr402671	regulatory region 402671	713 bp downstream
Tssr3543	transcription start site region 3543	1649 bp upstream
Tssr102456	transcription start site region 102456	1429 bp downstream
Tssr102457	transcription start site region 102457	1069 bp downstream
Tssr102458	transcription start site region 102458	684 bp downstream
Tssr102459	transcription start site region 102459	653 bp downstream
Tssr102460	transcription start site region 102460	628 bp downstream
Tssr102461	transcription start site region 102461	594 bp downstream
Tssr102462	transcription start site region 102462	561 bp downstream
Tssr102463	transcription start site region 102463	178 bp upstream
Tssr102464	transcription start site region 102464	452 bp upstream
Tssr102465	transcription start site region 102465	571 bp upstream
Tssr102466	transcription start site region 102466	728 bp upstream
Tssr102467	transcription start site region 102467	946 bp upstream
Tssr102468	transcription start site region 102468	982 bp upstream
Tssr102469	transcription start site region 102469	1024 bp upstream
Tssr102470	transcription start site region 102470	1592 bp upstream
Tssr108665	transcription start site region 108665	1811 bp upstream
Tssr108666	transcription start site region 108666	1213 bp upstream
Tssr108667	transcription start site region 108667	962 bp upstream
Tssr108668	transcription start site region 108668	951 bp upstream
Tssr108669	transcription start site region 108669	928 bp upstream
Tssr108670	transcription start site region 108670	804 bp upstream
Tssr108671	transcription start site region 108671	467 bp upstream
Tssr108672	transcription start site region 108672	within coordinates
Tssr108673	transcription start site region 108673	23 bp downstream
Tssr108674	transcription start site region 108674	67 bp downstream
Tssr108675	transcription start site region 108675	234 bp downstream
Tssr108676	transcription start site region 108676	279 bp downstream
Tssr108677	transcription start site region 108677	323 bp downstream
Tssr108678	transcription start site region 108678	339 bp downstream
Tssr108679	transcription start site region 108679	638 bp downstream
Tssr108680	transcription start site region 108680	1292 bp downstream
Tssr108681	transcription start site region 108681	1323 bp downstream
Tssr108682	transcription start site region 108682	1366 bp downstream