rs29446428 SNP Detail

Summary

• ID
  rs29446428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6340866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTCAT TCATGAATAC
  TTGTCTGCAC ACTGAGGCTA GAGGGTAGGA AGTACTGTTG CGTGTACATG CTGGGCAGGC
  AGGACCTCTA GCCTCTGGGC ATTTGACCCT TCCTTAAATG CTAGGGACTC CGTCTTTGCC
  ACACTTCACA CCTGTCACAT CCTTGTCCTC TCCTCTCGCC ATGTGATTTT ACCTCGAACT
  Y
  GTAGGCTTAA AATGATCCTC CTGCCCCAAC CTCCTGAGTG TCTGAGACTA CAGGGTTACA
  CCCTCACCCT CTCCTGGGAC TGTCATTTCT CTGCAGCCTT TTGGTCCTAG TTTCTTTTTC
  TTTTTCTTTT CTTTTCTTTT CTTTCTTTCT TTCTTTTTTT TTTTTTTTAA GACAGGGTTT
  CTCTGTGTAG CCCTGGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38811727	mCV22932794	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss131642784	ENSMUSSNP3347490	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29446428					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6340866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	794 bp distal
Rr246943	regulatory region 246943	65 bp distal
Tssr100241	transcription start site region 100241	1786 bp downstream
Tssr100242	transcription start site region 100242	1760 bp downstream
Tssr100243	transcription start site region 100243	1729 bp downstream
Tssr100244	transcription start site region 100244	1469 bp downstream
Tssr100245	transcription start site region 100245	1431 bp downstream
Tssr100246	transcription start site region 100246	1413 bp downstream
Tssr100247	transcription start site region 100247	1293 bp downstream
Tssr100248	transcription start site region 100248	1270 bp downstream
Zmiz2	zinc finger, MIZ-type containing 2	within coordinates