rs29446455 SNP Detail

Summary

• ID
  rs29446455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGCCAAATCA TCCTAGGAGT CCAGTTGCAG GTGACCACGT GTTGGCTCAG GAACAGCTAG
  GTGGCAGGCA GCCGCAGTGG GAGTGGCAGA ACGATAGGGC GGTAGGTCCA CCCCACGCTC
  TCTTCCTGCT AACAGTGAAA CCTGAGCAGC CAGGTTTCAG GCTAGGGGGA GAGGTTACAA
  ATGAGGACTA AGAAAAATCT GTTTTCTGAA ATCATAAAGA GCTTCATTCC AGACTTGCAG
  GGATGTTCAA CATACATAAA TCAGTAAATG AGATCCACTG TATAAATGGA CTCAATTCAA
  R
  AAAGCAGAAA GTAGATTCAG AAAATGCCTG TGGTGAAAAC CAACAGCTCT TCATTATTAA
  AGCCCTGAAG ACAACAGAAA TACAAGGAAC GTATTTCAAT ACAATAAAGG AAATATACAA
  CAAGCCTGTA GCCAACGGAA TGCTAACCGG AGAAAAACTG GAAGCATTTC TGCTAAAAAT
  CAGGAAAGGG ACATGGATAC TTTCTCTCAG TACTTCTTTT CAGCAGAGTA CTTGAAGTTT
  TTGCTACAGC AGTAAGGCAA GAGAAGGAGA CAAGATGGAT TCAAACAGGA AAGGAAGAAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38810999	mCV24634343	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29446455					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464107 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452988	regulatory region 452988	1855 bp distal
Rr452989	regulatory region 452989	630 bp distal
Tssr103714	transcription start site region 103714	1366 bp upstream
Tssr103715	transcription start site region 103715	1407 bp upstream
Tssr109677	transcription start site region 109677	392 bp downstream
Tssr109678	transcription start site region 109678	768 bp downstream
Tssr109679	transcription start site region 109679	1046 bp downstream
Tssr109680	transcription start site region 109680	1308 bp downstream
Tssr109681	transcription start site region 109681	1430 bp downstream
Tssr109682	transcription start site region 109682	1699 bp downstream
Tssr109683	transcription start site region 109683	1750 bp downstream
Tssr109684	transcription start site region 109684	1776 bp downstream
Tssr109685	transcription start site region 109685	1821 bp downstream
Tssr109686	transcription start site region 109686	1884 bp downstream
Tssr109687	transcription start site region 109687	1933 bp downstream
Tssr109688	transcription start site region 109688	1980 bp downstream