rs29446968 SNP Detail

Summary

• ID
  rs29446968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119158876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG ACCACGTGAC CCACGCTGCC
  Y
  GCTGAGCCTG GGGGTCTTCG GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38811343	mCV22647445	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132903841	ENSMUSSNP3276656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29446968					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119158876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4265	CpG island 4265	within coordinates
Gaa	glucosidase, alpha, acid	within coordinates
Rr232403	regulatory region 232403	1876 bp distal
Rr246278	regulatory region 246278	within coordinates
Rr403185	regulatory region 403185	within coordinates
Tssr106170	transcription start site region 106170	82 bp downstream
Tssr106171	transcription start site region 106171	within coordinates