rs29447821 SNP Detail

Summary

• ID
  rs29447821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87013445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACT TCCTGAGTGC TGGGATACCC
  W
  GTGTGCAGAA GCACGTCTGG TTTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38813968	mCV25200298	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A	T
ss132510984	ENSMUSSNP2372847	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29447821					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87013445 () rs orientation: forward

Symbol	Name	Function Class
Gm11491	predicted gene 11491	within coordinates
Ska2	spindle and kinetochore associated complex subunit 2	within coordinates
Tssr103910	transcription start site region 103910	1036 bp downstream
Tssr109949	transcription start site region 109949	555 bp upstream