rs29448516 SNP Detail

Summary

• ID
  rs29448516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA GCCCAAAGAA ACCATAATTT
  R
  GTATAGAAGG GGCCTTCTAA TGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38813237	mCV22890657	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss132650933	ENSMUSSNP6699169	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29448516					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844466 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	598 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	171 bp distal
Gm74287	predicted gene, 74287	611 bp downstream
Gm74290	predicted gene, 74290	1771 bp upstream
Rr454892	regulatory region 454892	1074 bp distal
Rr454893	regulatory region 454893	1540 bp proximal
Tssr3647	transcription start site region 3647	1656 bp downstream
Tssr104288	transcription start site region 104288	1976 bp downstream
Tssr104289	transcription start site region 104289	1968 bp downstream
Tssr104290	transcription start site region 104290	1920 bp downstream
Tssr104291	transcription start site region 104291	1905 bp downstream
Tssr104292	transcription start site region 104292	1808 bp downstream
Tssr104293	transcription start site region 104293	1701 bp downstream
Tssr104294	transcription start site region 104294	1667 bp downstream
Tssr104295	transcription start site region 104295	1623 bp downstream
Tssr104296	transcription start site region 104296	1599 bp downstream
Tssr104297	transcription start site region 104297	1576 bp downstream
Tssr104298	transcription start site region 104298	1542 bp downstream
Tssr104299	transcription start site region 104299	1508 bp downstream
Tssr104300	transcription start site region 104300	1488 bp downstream
Tssr104301	transcription start site region 104301	1368 bp downstream
Tssr104302	transcription start site region 104302	1354 bp downstream
Tssr104303	transcription start site region 104303	1335 bp downstream
Tssr104304	transcription start site region 104304	1293 bp downstream
Tssr104305	transcription start site region 104305	1271 bp downstream
Tssr104306	transcription start site region 104306	1256 bp downstream
Tssr104307	transcription start site region 104307	1239 bp downstream
Tssr104308	transcription start site region 104308	1166 bp downstream
Tssr104309	transcription start site region 104309	1142 bp downstream
Tssr104310	transcription start site region 104310	1056 bp downstream
Tssr104311	transcription start site region 104311	1007 bp downstream
Tssr104312	transcription start site region 104312	938 bp downstream
Tssr104313	transcription start site region 104313	922 bp downstream
Tssr104314	transcription start site region 104314	517 bp downstream
Tssr104315	transcription start site region 104315	1769 bp upstream
Tssr110228	transcription start site region 110228	1990 bp upstream
Tssr110229	transcription start site region 110229	1970 bp upstream
Tssr110230	transcription start site region 110230	1933 bp upstream