rs29449054 SNP Detail

Summary

• ID
  rs29449054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68918224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACCTGTC CTGGCGCTCT GTCTCCATGG CACTGTTCGG
  CTTCAAGGCT TTTCTTGTCT TAAGCCTCTG ACTTTGCCGT CCTCCAAAGT TTATGGTGCC
  Y
  CCTTGTATGA GCAACTCGTG TGGAAATGTC AGTTAGGACT TCCCTTATAC TTATGGGCTG
  CCAAGACCCT GGAGGATCTC ATCTACAAGT GAGGAGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38815011	mCV23351319	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132347485	ENSMUSSNP255488	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss323727061	CHEV_11_68840900	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29449054					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68918224 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	1377 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr253641	regulatory region 253641	1352 bp proximal
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	1343 bp downstream
Tssr102358	transcription start site region 102358	1313 bp downstream
Tssr102359	transcription start site region 102359	564 bp downstream
Tssr102360	transcription start site region 102360	275 bp downstream
Tssr102361	transcription start site region 102361	62 bp downstream
Tssr102362	transcription start site region 102362	39 bp downstream
Tssr102363	transcription start site region 102363	577 bp upstream