rs29449208 SNP Detail

Summary

• ID
  rs29449208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116426104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG AATGGGCTAA TGGAACGGCC
  M
  GACTGGGAGA CTGCCATCCA GAAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38816481	mCV24685537	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss132887396	ENSMUSSNP5213706	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323865850	CHEV_11_116396592	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29449208					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116426104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	834 bp distal
Rr460330	regulatory region 460330	1711 bp distal
Rr460332	regulatory region 460332	528 bp distal
Rr460333	regulatory region 460333	583 bp distal
Rr460334	regulatory region 460334	995 bp proximal
Sphk1	sphingosine kinase 1	within coordinates
Tssr3739	transcription start site region 3739	1274 bp upstream
Tssr105969	transcription start site region 105969	1975 bp downstream
Tssr105970	transcription start site region 105970	1306 bp downstream
Tssr105971	transcription start site region 105971	1224 bp downstream
Tssr105972	transcription start site region 105972	1209 bp downstream
Tssr111938	transcription start site region 111938	1569 bp upstream