rs29449248 SNP Detail

Summary

• ID
  rs29449248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70401222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGGACCCA AATGCTTAAT AGACAACAAG TGGGACTACC
  ACTTCCAAGA AACAGAGTAA GTCCTACTTT GCATTTGTAT CCCCCGTTCT GTGCCTCTCC
  Y
  CACCTGCTCT CTTACTACCT GGTCCAGAAA CAGTGGACCA GACTGAACTC CTAGAGAGTT
  CCTTCCAAAT AGCCCATCCA GCCCTTTACA GATCTTAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38813041	mCV22858036	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132372156	ENSMUSSNP976209	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss323735913	CHEV_11_70323898	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29449248					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70401222 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	126 bp upstream
Rr235912	regulatory region 235912	within coordinates
Rr247104	regulatory region 247104	21 bp distal
Rr251336	regulatory region 251336	1694 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	603 bp downstream
Tssr102718	transcription start site region 102718	406 bp downstream
Tssr102719	transcription start site region 102719	197 bp downstream
Tssr102720	transcription start site region 102720	141 bp downstream
Tssr102721	transcription start site region 102721	441 bp upstream
Tssr102722	transcription start site region 102722	666 bp upstream
Tssr102723	transcription start site region 102723	694 bp upstream
Tssr108976	transcription start site region 108976	772 bp downstream