rs29449681 SNP Detail

Summary

• ID
  rs29449681
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:45949149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGAGCAA CCCTTCTCCA GTTACGTTGC CTTACGTGTA
  CTTAAACTGG ACTGTGTGTA AAGAGATTGC CCTCAGTGCT TTTCACCATC CGAGACCTTT
  W
  GTCGTTCTCT TCTATCCTGT ACAGCTCCTT TTGTTTAAGA GTCTAGATCC ATCAGTCTCT
  GTAGAGGACT ATGTCTCACT TGTTCCCTCA TGAACATTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38814135	mCV22546692	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss132095902	ENSMUSSNP6092617	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss323657878	CHEV_11_45871824	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29449681					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45949149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam19	ADAM metallopeptidase domain 19			Intron
				Noncoding-Transcript-Variant
Gm72342	predicted gene, 72342			within coordinates
Rr445870	regulatory region 445870			669 bp distal
Rr445871	regulatory region 445871			150 bp distal
Rr445872	regulatory region 445872			within coordinates
Rr445873	regulatory region 445873			1797 bp proximal
Tssr107582	transcription start site region 107582			190 bp upstream
Tssr107583	transcription start site region 107583			127 bp upstream