rs29450146 SNP Detail

Summary

• ID
  rs29450146
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96188341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG ACCCCAGGCA CCGTCTTACA
  M
  CCAATCCTCC CTGTCTTCAG GTTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38815429	mCV27575673	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss132676674	ENSMUSSNP5785788	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29450146					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96188341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	1410 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	1166 bp proximal
Tssr3658	transcription start site region 3658	1738 bp upstream
Tssr104480	transcription start site region 104480	1239 bp upstream
Tssr104481	transcription start site region 104481	1269 bp upstream
Tssr104482	transcription start site region 104482	1290 bp upstream
Tssr104483	transcription start site region 104483	1531 bp upstream
Tssr104484	transcription start site region 104484	1574 bp upstream
Tssr104485	transcription start site region 104485	1597 bp upstream
Tssr104486	transcription start site region 104486	1622 bp upstream
Tssr104487	transcription start site region 104487	1692 bp upstream
Tssr104488	transcription start site region 104488	1708 bp upstream