rs29450250 SNP Detail

Summary

• ID
  rs29450250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:51896832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCACATAC CCACACAGGC TTTTTTGTTC ATTTGTTGTT
  TATTTAATGG TTAATATTAA ATCCCACCAA TTCCCGTTTG ATGGGGAAGG ATTTTGTTTG
  K
  TTGGTTGGTT TGTTTTGTTT TGTTTTAAAC AGAAAATAGG GTATGTACTT GTCCTTGAAT
  GATGTACAGC AGTGGGATAG GATGGAGATA CTTCCAGGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38816119	mCV22560718	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132125430	ENSMUSSNP3669991	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss323669669	CHEV_11_51819507	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29450250					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51896832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdkl3	cyclin dependent kinase like 3			Intron
				Noncoding-Transcript-Variant
Rr386068	regulatory region 386068			961 bp downstream
Rr446764	regulatory region 446764			1646 bp distal
Rr446765	regulatory region 446765			1172 bp distal
Rr446766	regulatory region 446766			1699 bp proximal
Tssr101304	transcription start site region 101304			1788 bp downstream
Tssr101305	transcription start site region 101305			1694 bp downstream
Tssr101306	transcription start site region 101306			1670 bp downstream
Tssr101307	transcription start site region 101307			1639 bp downstream