rs29450250 SNP Detail

Summary

• ID
  rs29450250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51896832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCACATAC CCACACAGGC TTTTTTGTTC ATTTGTTGTT
  TATTTAATGG TTAATATTAA ATCCCACCAA TTCCCGTTTG ATGGGGAAGG ATTTTGTTTG
  K
  TTGGTTGGTT TGTTTTGTTT TGTTTTAAAC AGAAAATAGG GTATGTACTT GTCCTTGAAT
  GATGTACAGC AGTGGGATAG GATGGAGATA CTTCCAGGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38816119	mCV22560718	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132125430	ENSMUSSNP3669991	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss323669669	CHEV_11_51819507	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29450250					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51896832 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	within coordinates
Cpgi2847	CpG island 2847	1437 bp distal
Rr234349	regulatory region 234349	1569 bp proximal
Rr246700	regulatory region 246700	631 bp distal
Rr386068	regulatory region 386068	961 bp downstream
Tssr101304	transcription start site region 101304	1788 bp downstream
Tssr101305	transcription start site region 101305	1694 bp downstream
Tssr101306	transcription start site region 101306	1670 bp downstream
Tssr101307	transcription start site region 101307	1639 bp downstream