rs29450350 SNP Detail

Summary

• ID
  rs29450350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115071131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GACAATTTGA CTCCTTCCTC
  Y
  TCTTTACAGC TAAATTCCCA AGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38816217	mCV22628348	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29450350					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115071131 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459790	regulatory region 459790	1840 bp distal
Rr459791	regulatory region 459791	698 bp distal
Rr459792	regulatory region 459792	1525 bp proximal
Tssr105846	transcription start site region 105846	265 bp downstream
Tssr105847	transcription start site region 105847	4 bp upstream
Tssr105848	transcription start site region 105848	650 bp upstream