rs29450838 SNP Detail

Summary

• ID
  rs29450838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:70058802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGATCCT GGTGTCTTGG TTTCCGTCCA GACAGCCCCA
  GAGGCCTCGT GTTTGTTCAA GTGTAACAAT GATATACGAA AACCTCCAGA ACTCAAGGAT
  Y
  GAGGAGAAAA CCCAAGAGCC TGGTAAAGGT GAGAGCAGAG CCCATACTCC TGGCCCAGCA
  TCTTCACTTG TCCCCAATCT GTGTGTGTGT CCACCCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38817245	mCV23532900	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132366955	ENSMUSSNP6654563	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323733896	CHEV_11_69981478	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29450838					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70058802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clec10a	C-type lectin domain family 10, member A			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr102659	transcription start site region 102659			1313 bp downstream
Tssr102660	transcription start site region 102660			1269 bp downstream
Tssr102661	transcription start site region 102661			1192 bp downstream
Tssr102662	transcription start site region 102662			778 bp downstream
Tssr102663	transcription start site region 102663			754 bp downstream