rs29450936 SNP Detail

Summary

• ID
  rs29450936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5787903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG CTTCCCATCG GAAGCCCCAG
  Y
  TCTATGCAAA TAACGCCCGA GGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38817860	mCV25062393	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss131639971	ENSMUSSNP6476075	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323549170	CHEV_11_5737906	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29450936					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5787903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	within coordinates
Polm	polymerase (DNA directed), mu	within coordinates
Rr369123	regulatory region 369123	within coordinates
Rr385539	regulatory region 385539	1585 bp upstream
Tssr106647	transcription start site region 106647	167 bp upstream
Tssr106648	transcription start site region 106648	145 bp upstream
Tssr106649	transcription start site region 106649	68 bp upstream