rs29451166 SNP Detail

Summary

• ID
  rs29451166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83337568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC TTCAGTGATT GTCACAGGTA
  Y
  GTCTGGGTCC CCGCAGAAAT AACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38817599	mCV22342780	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132469355	ENSMUSSNP5000442	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss323767185	CHEV_11_83260244	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29451166					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83337568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3416	CpG island 3416	1421 bp distal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452961	regulatory region 452961	1500 bp distal
Rr452962	regulatory region 452962	865 bp proximal