rs29451728 SNP Detail

Summary

• ID
  rs29451728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:103063887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC AAAAGTCAAG TGCAAGACTT
  R
  ATTGCCCTGG GTGGATTTTC GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38818666	mCV22326856	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132741898	ENSMUSSNP2570928	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323834912	CHEV_11_103034375	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29451728					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103063887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	1268 bp distal
Fmnl1	formin-like 1	Intron
Rr369390	regulatory region 369390	1912 bp upstream
Rr457539	regulatory region 457539	1738 bp distal
Rr457541	regulatory region 457541	640 bp distal
Rr457542	regulatory region 457542	50 bp proximal
Rr457543	regulatory region 457543	327 bp proximal
Tssr105323	transcription start site region 105323	1939 bp downstream
Tssr111157	transcription start site region 111157	1835 bp downstream