rs29452015 SNP Detail

Summary

• ID
  rs29452015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71640052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGAGTCTG TTTCCCAATA ACCCTAAACT CTGTTTTAAA
  ATTACACCTT TGCAGATCTG CAACCCTGTA GGTGCAACAC TATGAACTAA CCAGTACCCC
  R
  GAGTTCTTGA TTCTAGCTGC ATATGTATCA AAAGATGGCC TAATCAGCCA TCACTGGAAA
  GAGAGGCCCA TTGGACACGC AAACTTTATA TGCCCCAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38818419	mCV23438284	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss132393492	ENSMUSSNP6747992	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323743707	CHEV_11_71562728	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29452015					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71640052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1192 bp proximal
Rr236016	regulatory region 236016	349 bp proximal
Rr241547	regulatory region 241547	252 bp distal
Rr247127	regulatory region 247127	548 bp proximal
Tssr102813	transcription start site region 102813	688 bp upstream
Tssr102814	transcription start site region 102814	1454 bp upstream
Tssr102815	transcription start site region 102815	1756 bp upstream
Tssr102816	transcription start site region 102816	1772 bp upstream
Tssr102817	transcription start site region 102817	1830 bp upstream
Wscd1	WSC domain containing 1	694 bp upstream