rs29452036 SNP Detail

Summary

• ID
  rs29452036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTCTATT CTCATGCCTT TCCATCACCT CTCTCCCATC
  CTTACTCACT CTTCCTCAGC CACGTTGCAT CACAACTGGC TTCCATTTGC ATTGGATTCT
  Y
  TGTGACTTCA AATGGCATCC GACCAGCCTG GCCAGTGGGG ACTTGCTTTG CCCTAATGGA
  AGCCACTCTG TGATTTTGAT AGCCTTCTGC TCCTGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38819122	mCV24154623	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss132350036	ENSMUSSNP6246239	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss323727819	CHEV_11_68971277	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29452036					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048601 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	440 bp distal
Rr449891	regulatory region 449891	776 bp distal
Rr449892	regulatory region 449892	505 bp distal
Rr449893	regulatory region 449893	334 bp proximal
Tssr102419	transcription start site region 102419	874 bp downstream
Tssr102420	transcription start site region 102420	859 bp downstream
Tssr102421	transcription start site region 102421	724 bp downstream
Tssr102422	transcription start site region 102422	714 bp downstream
Tssr102423	transcription start site region 102423	694 bp downstream
Tssr102424	transcription start site region 102424	665 bp downstream