rs29452076 SNP Detail

Summary

• ID
  rs29452076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC TGGTGCATAT TACGTGGTAA
  W
  GGGGACTGAG GGACAATATG GTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38818796	mCV24191020	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss132901459	ENSMUSSNP2949930	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323870306	CHEV_11_118279115	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29452076					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308627 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	760 bp proximal
Gm72450	predicted gene, 72450	1286 bp upstream
Rr403174	regulatory region 403174	1074 bp upstream
Rr461044	regulatory region 461044	1517 bp distal
Rr461045	regulatory region 461045	131 bp proximal
Rr461046	regulatory region 461046	1212 bp proximal
Rr461047	regulatory region 461047	1297 bp proximal
Tssr106139	transcription start site region 106139	1422 bp upstream
Tssr112167	transcription start site region 112167	1977 bp upstream
Tssr112168	transcription start site region 112168	1960 bp upstream
Tssr112169	transcription start site region 112169	1155 bp downstream
Tssr112170	transcription start site region 112170	1217 bp downstream
Tssr112171	transcription start site region 112171	1315 bp downstream