rs29452228 SNP Detail

Summary

• ID
  rs29452228
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84071894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTTGTTAG GAGATTTAAG ACAAAAGGCT CTAGGATTTC CTGATTCCAT GTCTACATAA
  ATTGTTTCAG AAACTTCCCA ACGTGCAGAA TAAATCTAAT AACCTGGCCT TCACTCTCAG
  ACGTTGTTCT CTCTTGACTT TTCTGTTTCA TTTTTCCCTC TAACTCTACA GTTCAGGCTG
  GGAACTATGC TTTCCTTGGT TACATAGTTT AGTTTCCTCT CTGTTAGCGG ATAGGAGAAC
  CCTAATTTGT CTGTTGCTTG GTGAATGGGG ATGCCCTTGA CATCTGTCTT GGGATTTTTT
  K
  TTTGTGTGTG TGTGTGTGTT CATTTGACAA GCACTTGTTG GAAAAGCGTT GTTGTCTAAC
  AGGATTTTTC TAAAAAGCAG TGTAGGTAGT AGGTGCTTGC TAGCTGCAAA GTAGCAAGTT
  TCTTCCCACT TCTTTGGCTT CAGTTTATTT CTAAATACTA TTTAAGCCTT AACAGAAGTA
  TTGATGTGAC CCCCATGATA ATTAGCAAGA CTTGTGGGTT TGAAAGATGT CAACAGTAAA
  ATACTGAATT CTGGAGCTGC CAGCGCTTAT TAATGTTATA GAGGTTTTGC TTGTGATTTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38818916	mCV24263417	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29452228					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84071894 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	560 bp distal
Tssr103798	transcription start site region 103798	1411 bp downstream
Tssr103799	transcription start site region 103799	1381 bp downstream
Tssr103800	transcription start site region 103800	1219 bp downstream
Tssr103801	transcription start site region 103801	1205 bp downstream
Tssr103802	transcription start site region 103802	1191 bp downstream
Tssr103803	transcription start site region 103803	708 bp downstream