rs29452501 SNP Detail

Summary

• ID
  rs29452501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75480530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGTGGGG CAGCATTGGG CCCTAAGCTA CCCAAGTTCA
  GAAATGGGAT ATGTCCAAGT AGAGAGAAAC TTGGGAAACT CTTATGGCCA AGTGTGCAGA
  R
  GGCACTTTGT CTCTCCCCCC CAGGGTTTTC TCCTTGGAGG TGATGAGATG TTGAAGACAC
  AGTGTAGTTT GAATGGCACA CAGAAGAGAG CCCGGTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38820670	mCV22728606	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss132438709	ENSMUSSNP2143081	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss323751091	CHEV_11_75403206	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29452501					SNP	A	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75480530 () rs orientation: forward

Symbol	Name	Function Class
4931413K12Rik	RIKEN cDNA 4931413K12 gene	320 bp downstream
Cpgi3269	CpG island 3269	859 bp distal
Gm53686	predicted gene, 53686	within coordinates
Pitpna	phosphatidylinositol transfer protein, alpha	Intron
Rr402732	regulatory region 402732	1496 bp downstream
Rr451215	regulatory region 451215	1597 bp distal
Rr451216	regulatory region 451216	415 bp distal
Tssr102991	transcription start site region 102991	1553 bp downstream
Tssr102992	transcription start site region 102992	1527 bp downstream