rs29452572 SNP Detail

Summary

• ID
  rs29452572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG CCACATTCTC ACCTGCCTCC
  R
  GGCAGCCATG AGCTTCGGGG AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38821669	mCV22780224	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss132355553	ENSMUSSNP4151115	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323729415	CHEV_11_69221536	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29452572					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	485 bp proximal
Gm72933	predicted gene, 72933	1720 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1840 bp upstream
Rr402670	regulatory region 402670	561 bp upstream
Rr402671	regulatory region 402671	1325 bp upstream
Tssr3543	transcription start site region 3543	646 bp downstream
Tssr102455	transcription start site region 102455	1156 bp downstream
Tssr102456	transcription start site region 102456	877 bp upstream
Tssr102457	transcription start site region 102457	1247 bp upstream
Tssr102458	transcription start site region 102458	1640 bp upstream
Tssr102459	transcription start site region 102459	1660 bp upstream
Tssr102460	transcription start site region 102460	1693 bp upstream
Tssr102461	transcription start site region 102461	1736 bp upstream
Tssr102462	transcription start site region 102462	1764 bp upstream
Tssr108661	transcription start site region 108661	1264 bp upstream
Tssr108662	transcription start site region 108662	414 bp upstream
Tssr108663	transcription start site region 108663	385 bp upstream
Tssr108664	transcription start site region 108664	203 bp upstream
Tssr108665	transcription start site region 108665	524 bp downstream
Tssr108666	transcription start site region 108666	1112 bp downstream
Tssr108667	transcription start site region 108667	1358 bp downstream
Tssr108668	transcription start site region 108668	1379 bp downstream
Tssr108669	transcription start site region 108669	1394 bp downstream
Tssr108670	transcription start site region 108670	1513 bp downstream
Tssr108671	transcription start site region 108671	1850 bp downstream