rs29452827 SNP Detail

Summary

• ID
  rs29452827
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29455881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGCGCTGTGA ACTGGGACCC
  S
  GTCTCAAAAA GTTCAAACAA AAAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38820875	mCV25279726	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss131895773	ENSMUSSNP235350	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G	G
ss323610830	CHEV_11_29405881	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29452827					SNP	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29455881 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1681 bp distal
Rr239824	regulatory region 239824	within coordinates
Rr249497	regulatory region 249497	681 bp distal
Tssr100714	transcription start site region 100714	1892 bp downstream
Tssr100715	transcription start site region 100715	310 bp downstream
Tssr100716	transcription start site region 100716	1811 bp upstream