rs29453170 SNP Detail

Summary

• ID
  rs29453170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83327192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCCAAA ACCCTGCTCC
  CTTTATTTAT ACAAGCTAGG ATGTTCCAGA AGGTCCCAAC AGAGACTCAT ATGGATGATT
  TAAAGTCATC TGTATTGCCA AAAATGATGG ATCTTGTACC AATCCATCTT CCTCTCCCTC
  CCTCCCTCTA GGATCTCATT TATAGCCCAG GCTGGCCTCA AACTCACAAT CACCAATCAC
  Y
  TATCTCAGAT TCCTGAATAC TGGAAGCACA GGCATGCATC ACCTTTTGGT ATCAGGCTTC
  ACCTTGTTCT CTGGGCATGT TCTATGAACA GCGGGAAGCA GTGCTTGGGC TTGCTAATAA
  ATGCAGCTCA TTCTTTTCCG ATGCTGAACC CTCTCTTTGG ATGGGAAACA TTCCATTCCA
  AGCTTTCACA CATTCTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38821488	mCV23038079	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss323767161	CHEV_11_83249868	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29453170					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83327192 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	1328 bp upstream
Tssr3609	transcription start site region 3609	1360 bp upstream
Tssr103697	transcription start site region 103697	1280 bp upstream
Tssr103698	transcription start site region 103698	1289 bp upstream
Tssr103699	transcription start site region 103699	1312 bp upstream
Tssr103700	transcription start site region 103700	1343 bp upstream