rs29453289 SNP Detail

Summary

• ID
  rs29453289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAATAGAAA ACAATCTATG AAACCAGGAA GATGATGGCA CACACCTTTA ATCCTAGCAC
  TCTGGAGGCA GAGGCAGATG GATCTCTGTG AGTTCAAGGC AGCCTGGTCT ACTCAGTGAA
  TTCCAGGAAG AGTCAGGGTT ATACAGAGAA ACCCTGTCTC AAAAAATAAA ACCCAAACCC
  AAGCCAACCA ACCAACCTAT GCCTTAAAAT AGTAAAAGAG GGGCTGGAGA GATGGCTCAG
  CATTTAAGAG CACTTACTGC TCTTCCAGAG GCCCTGAGTT CAATTCCCAG CAACCACGTG
  R
  TGGCTTACAC CATCTGTAAT GGGATTTGAT GCCCTCTTCT GGTGTGTGTC TGAAGACAGC
  TACAGTGTAC CTATATATAA TAAATAAATC TTTTTAAAAA ATTGTAAAAG AACTGAAATC
  ATACTAAATA GCATCCTGTG ACCATAATGG AATACACTAG AGACCTTAAC TGCGAGAGTT
  CAAGGTCAGG GCCTGAGGAG CGAGGCAGCT CAGCAGGTAA GAACACTGGT TGCTTTTGCA
  GAGGATCCCT GCTCAGTTCC CAGCACCCAC ACAGTGGCTC ACAACAGTCT GCAATTCCAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss38818991	mCV23826472	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29453289					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	137 bp proximal
Cpgi2458	CpG island 2458	1095 bp proximal
Rr441480	regulatory region 441480	1957 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	887 bp distal
Rr441483	regulatory region 441483	26 bp proximal
Rr441484	regulatory region 441484	502 bp proximal
Rr441485	regulatory region 441485	1022 bp proximal
Rr441486	regulatory region 441486	1804 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	626 bp downstream
Tssr106449	transcription start site region 106449	1150 bp downstream