rs29453699 SNP Detail

Summary

• ID
  rs29453699
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121151626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCCAC CCCCGGGGAG
  GGGCGGGACC CGCACTCAGA CCCACTGCCC ATCATCAGGC AGGACGCAGA AGACCCACGT
  CAGCTACCCA TGAGCAGGGT CAGACCCTGG ACAAGACCTG GTCCCCATCA GGGAGGGATC
  CTGATCCGCT ATCCGGGAGC AAGGAAGGCT AGACTCACCA CCAGGACCCA TTCACTGCCC
  W
  TAACCAAGAC CTGACTGATT CTGACCTACC CTAGTTTAAT GCCCACGACC ATCACTGGGA
  TCACAGCCCC CCAGCGCTCC ACCCGGAGTA TTTAACATGC TGGCCCACTC CTGTCTGCCC
  TCCTACTGCC AGGTCCCCTG CACTGGTATT CTAACCCACG GCCCTTTGTC CAGTCTGACA
  TGGGACTCTC AGAACACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38822002	mCV24194203	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss132910509	ENSMUSSNP1118436	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29453699					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121151626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4342	CpG island 4342			within coordinates
Foxk2	forkhead box K2			Intron
				Noncoding-Transcript-Variant
Rr461946	regulatory region 461946			800 bp distal
Tssr106398	transcription start site region 106398			745 bp downstream
Tssr106399	transcription start site region 106399			679 bp downstream
Tssr106400	transcription start site region 106400			396 bp upstream