rs29454079 SNP Detail

Summary

• ID
  rs29454079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5743786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGAGGA GCTGGTGGAG
  GGGCAGGGGT GCAGGCTGCT CTGAGCCTTC CTGTGACTCT GCAGAGGGAG GCCTGGAGGA
  GCTGGTGGAA GAGCTCAACA GCGGGAAGGT GATGTACGCC TTCTGCAGGG TGAAGGACCC
  CAACTCCGGC CTGCCCAAGT TTGTCCTCAT CAACTGGGTA TGTGAAGTCA GCCCCTCTGA
  Y
  GCCACTGGGG AAGCTCCTGG TGTGCTTTCC TTTGACCCTT GGGAACAGAC ACCACTCACT
  CAGCAGGTCA GCAGACCTGT TAGGTGTAAA TGGGTGAACG AGTAGACTAG ACTGTTCACC
  GTTGTGAACC AAGGATTGGC TTTGCTTGGA ATTCACCCTC CCATTCATTT CTGCAGGATG
  TGGGGGAGGG GTCCGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss38821614	mCV22516782	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss131639657	ENSMUSSNP3205581	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
ss323549085	CHEV_11_5693789	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs29454079					SNP	T	T	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5743786 () rs orientation: forward

Symbol	Name	Function Class
Dbnl	drebrin-like	within coordinates
Rr250570	regulatory region 250570	215 bp proximal
Rr250571	regulatory region 250571	1416 bp proximal
Tssr100199	transcription start site region 100199	60 bp downstream