rs29454282 SNP Detail

Summary

• ID
  rs29454282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28534679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCAAGTT CAGGAAATCA GGGCAAAGAG CTGTTAAATT
  CAGCCCTTTG GGGACCTCCA CCCCATTCCC AGGCCTTTGT TTTCTCTAAA ATCTCACCAC
  M
  TTATGAAGAA GCTTCAGGTG GAAGTACTTG GCCCTTTTAA AGTTCGTTTG GGAAATATCA
  AGGCCTTTAG AAAATAAAAT AACTTCTGCT TCTCCAGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38822630	mCV23805082	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
ss131877101	ENSMUSSNP2990803	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29454282					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28534679 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	355 bp upstream
Cpgi2667	CpG island 2667	244 bp distal
Rr233134	regulatory region 233134	79 bp distal
Rr246448	regulatory region 246448	78 bp distal
Rr385862	regulatory region 385862	904 bp downstream
Tssr107205	transcription start site region 107205	574 bp upstream
Tssr107206	transcription start site region 107206	450 bp upstream
Tssr107207	transcription start site region 107207	370 bp upstream