rs29454309 SNP Detail

Summary

• ID
  rs29454309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58275671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCCAGGACG CTGCTCTCCC CGAAACTTCT CCGGGTGCTA ACCGTCTGTG CTTGCCTTGC
  TGCAGGAGGG TTCCTGCATG TGTACCAGAA CAAGTTCTGC TCCGAATCGA ATTGCACCAA
  GAACAGCACA GAGGTGGCCT TCACTGTCCA TCTATTTGAT GACCAAAGAT ACCATTTTGC
  AAGCCAGTGC TGCCAAGGAG AGTCCTGCAA TGCCACCCAC TCTGGTCTGT ACAGGGCCCA
  GCAGCCTGTC CTGGGCCACA CCCTCACACC CCACTCTTGC TTTTCTGCTT GCTTTGCTTG
  K
  CTGGGGGGTG GATGTCTCCA GTCCAGGCAC TTCTGCACCC AGTTGGATAA CGTTAGCATC
  TGACTTATAG CAGTTACATA AGAAACATGG GGGATGTTAA AGCAGGTCAA ACACCCTGCT
  TTCCCTTCGG TGAAGACAGG GATTTCATGG GCCATTCTTG TGGCAAGCGA AGCAAATGCT
  CGTTAGTCAT TTTTAAGTTT TGTGATCTCG GGGCCTCAAC TAAGAAGTTC TTTGAGACAA
  TGTCTCCCAC AGTCTAGACT CACCTCAAAC TTGCTATGGA CCCAAGGGTG GCCTTCACTC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38819625	mCV25372111	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss132196818	ENSMUSSNP5770058	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29454309					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58275671 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101734	transcription start site region 101734	1999 bp downstream
Tssr101735	transcription start site region 101735	225 bp downstream
Tssr101736	transcription start site region 101736	157 bp downstream
Tssr101737	transcription start site region 101737	117 bp downstream
Tssr101738	transcription start site region 101738	99 bp downstream
Tssr101739	transcription start site region 101739	1878 bp upstream
Tssr101740	transcription start site region 101740	1942 bp upstream
Tssr101741	transcription start site region 101741	1970 bp upstream
Tssr108157	transcription start site region 108157	1925 bp downstream
Tssr108158	transcription start site region 108158	1977 bp downstream