rs29454414 SNP Detail

Summary

• ID
  rs29454414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9823358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGAAGA AATAAAGAAA
  GAAATTGAAG ACTTTTAAAG TTCAATGAAA ATGAAGCCAC AACATACCCA AACTTATGGG
  ACACAATGAA AGCAGTCCTA TGAGGAAAAC TCATAGCTCT GAGTGCCTCC AAAAAGAAAC
  AAGAGAGAGT ATACACTAGC AGCTTGAAAG CTAGTGTACC TAGCACACCT GAAAGCTCTA
  R
  AACAAAAAGA AGCAAATTTA CCCAAGAGGA GTAGACAGCA GGAAATAATC AAACTCAGGG
  TTGATATAAA CCTATTGAAA ACAAAAAGAA CTATACAAAG AATCAACCAA ACCAGGACTT
  GGTTCTTTTA GAAAATCAAC AAAATAGATA AACCCTTAGC CAGACTAACT ACAGAGCACA
  GGGATAGTAT CCTAATTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38822319	mCV22917854	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss131676072	ENSMUSSNP3683070	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss323558259	CHEV_11_9773361	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29454414					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9823358 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	379 bp downstream
Tssr106859	transcription start site region 106859	450 bp downstream