rs29455009 SNP Detail

Summary

• ID
  rs29455009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGCTCAC GGGCTACTGG CCCGGCTCCG CCTCATCTGC
  CAGGCTCACA TCCCTCCCGC CCCGCCAAGG GCAGCAGCTG CTCCCGGCTC CAGAGGCATT
  Y
  GCGGGACAGT GGTTCCCGCT GACTGCTCCA TCACTGACTG CTCCATCACT CTTCGCTGTC
  TGGCTTCCCT TGTCTACCTC GTTTCTAACT GTGTGGCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38823663	mCV24154599	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132350012	ENSMUSSNP255127	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29455009					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047923 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	within coordinates
Rr449891	regulatory region 449891	98 bp distal
Rr449892	regulatory region 449892	within coordinates
Rr449893	regulatory region 449893	1012 bp proximal
Tssr102419	transcription start site region 102419	196 bp downstream
Tssr102420	transcription start site region 102420	181 bp downstream
Tssr102421	transcription start site region 102421	46 bp downstream
Tssr102422	transcription start site region 102422	36 bp downstream
Tssr102423	transcription start site region 102423	16 bp downstream
Tssr102424	transcription start site region 102424	within coordinates