rs29455061 SNP Detail

Summary

• ID
  rs29455061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAC TGGAGCTGTC AAGATGTGAG TAAAGGCATT TCCTGTCAAG
  Y
  CCGAGAGCCT TAGTTTCATC CTTGTAACTC ATGTGATAGA AGGAGAACCA GCCCCCTAAA
  ATTGTTCTCT GACCTCCCCA TGAGTACCAT AGCACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38820743	mCV22952751	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132364075	ENSMUSSNP1335168	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss323732632	CHEV_11_69836509	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29455061					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	1146 bp distal
Cpgi3169	CpG island 3169	844 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1912 bp downstream
Rr402686	regulatory region 402686	1545 bp downstream
Rr450199	regulatory region 450199	1585 bp distal
Rr450200	regulatory region 450200	963 bp distal
Rr450201	regulatory region 450201	518 bp proximal
Tssr102634	transcription start site region 102634	915 bp upstream