rs29455117 SNP Detail

Summary

• ID
  rs29455117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82960011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAAGAGG GCGTCAGATT TCATTAAGGG TGGTTATGAG
  CCACCATGTG GTTGCTGGGA CTGGAACTCA AGACCTTCAG AAGAGCAGTC AGTGCTCTTA
  Y
  CTGCTGAGCC ATCTCACCAG CCCCCTTTGC TCTTATTCTA ACGGCTCTGT CTGTTTTCCA
  GGAATGACAT TCAGCTGGAA AATGCAAAGG CTGCTGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38823561	mCV24260303	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132466438	ENSMUSSNP1040894	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29455117					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82960011 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	925 bp distal
Gm20234	predicted gene, 20234	1198 bp upstream
Rr452895	regulatory region 452895	1934 bp distal
Rr452896	regulatory region 452896	1600 bp distal
Rr452897	regulatory region 452897	671 bp distal
Rr452898	regulatory region 452898	83 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103642	transcription start site region 103642	765 bp downstream
Tssr103643	transcription start site region 103643	93 bp upstream
Tssr103644	transcription start site region 103644	142 bp upstream
Tssr103645	transcription start site region 103645	323 bp upstream
Tssr103646	transcription start site region 103646	392 bp upstream
Tssr103647	transcription start site region 103647	561 bp upstream
Tssr103648	transcription start site region 103648	631 bp upstream
Tssr103649	transcription start site region 103649	676 bp upstream
Tssr109640	transcription start site region 109640	1894 bp upstream