rs29455870 SNP Detail

Summary

• ID
  rs29455870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96199346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA CATCCAAAAT TACTGGAGAG
  Y
  CTCAATGGGC TTTAGGATCA GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38823205	mCV27575731	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss132676718	ENSMUSSNP4809350	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29455870					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96199346 () rs orientation: forward

Symbol	Name	Function Class
Gm74526	predicted gene, 74526	within coordinates
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	1610 bp upstream
Rr455366	regulatory region 455366	1427 bp distal
Rr455367	regulatory region 455367	within coordinates
Rr455368	regulatory region 455368	326 bp proximal
Rr455369	regulatory region 455369	1910 bp proximal
Tssr104501	transcription start site region 104501	1977 bp downstream
Tssr104502	transcription start site region 104502	1465 bp downstream
Tssr104503	transcription start site region 104503	1424 bp downstream
Tssr104504	transcription start site region 104504	1392 bp downstream
Tssr104505	transcription start site region 104505	1365 bp downstream
Tssr110327	transcription start site region 110327	1605 bp upstream
Tssr110328	transcription start site region 110328	353 bp downstream