rs29456565 SNP Detail

Summary

• ID
  rs29456565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGATGTT CTAAGGACCG
  AAGGTTCAAA AGCATGAAAG AGGGGCTACA TTATATCATT GAATCCAAGG GCTTAGATGC
  TAGGAAAGAA AATATTGAAA TGCCCTGAAA TCACAGGACT ATTCTTTAGC AGGAGTGCCA
  AGCTAGAAAT GGGTGGTGAT GGAAGAGAAC AGAAGATCTG AGGATGAGGT GGCCCAAGCT
  R
  GAGATGTATA AAGGTTAGGT AATTATAGGC ACCAGCCGAT ACCAACTGCA CTCCAGTACA
  TCACCCAAGC TCCTGTGGCT TTGGCTCGCA GCCAAAGCTT CTTCTTTACT GACACCTCAT
  TGGAGTCCCT CTCCCCAGTG AGCTTTCATG GTAGTCTTCA TGTGGCTGGA GGCTCCGATA
  AAAGGTCCAG TGTCTGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38826460	mCV22957192	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss323830626	CHEV_11_99913215	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29456565					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942727 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	880 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	865 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	1014 bp distal
Gm11571	predicted gene 11571	385 bp upstream
Krt31	keratin 31	1350 bp upstream
Tssr104894	transcription start site region 104894	203 bp upstream
Tssr104895	transcription start site region 104895	359 bp upstream
Tssr104896	transcription start site region 104896	380 bp upstream
Tssr110726	transcription start site region 110726	1344 bp upstream