rs29457124 SNP Detail

Summary

• ID
  rs29457124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102838696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA CTCCAGACTC ATTCTTTTTG
  Y
  CTGCAAGACT CCTCCCAGTT CACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38825985	mCV22882364	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132740425	ENSMUSSNP23562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29457124					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102838696 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	1182 bp upstream
Cpgi3944	CpG island 3944	676 bp distal
Cpgi3945	CpG island 3945	426 bp proximal
Rr457458	regulatory region 457458	692 bp distal
Rr457459	regulatory region 457459	719 bp distal
Rr457460	regulatory region 457460	within coordinates
Tssr111125	transcription start site region 111125	1814 bp upstream
Tssr111126	transcription start site region 111126	1302 bp upstream
Tssr111127	transcription start site region 111127	1145 bp upstream
Tssr111128	transcription start site region 111128	1119 bp upstream
Tssr111129	transcription start site region 111129	1092 bp upstream