rs29457130 SNP Detail

Summary

• ID
  rs29457130
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88902397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA CTGAGCCTGG TGAAACACCA
  K
  CTGCCTGCTG CCTGATCATC ACTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38825991	mCV22658256	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss132549915	ENSMUSSNP3846073	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323783772	CHEV_11_88872885	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29457130					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88902397 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	1698 bp distal
Rr454280	regulatory region 454280	775 bp proximal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	662 bp downstream
Tssr104067	transcription start site region 104067	594 bp downstream