rs29457283 SNP Detail

Summary

• ID
  rs29457283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68916557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAAATAAA TGGTTAGCTT GTATGTTGTG GGGTGAGAGA
  GAACATTGAA CATGATTTCC TGGATGGGAT ATTTACCACT TTGAAGACAT TTCACAGATG
  R
  TTTCCATCTT TATGAAAGGC TTAGGAAATA TGTGGCATTT CCTGTTGCTG TAGAGAGATC
  CTTAAAGTTC AGTGGCTTAT TATAATACTA AGAGTTCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38825401	mCV23351008	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132347450	ENSMUSSNP7224658	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323727052	CHEV_11_68839233	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29457283					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68916557 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr251243	regulatory region 251243	within coordinates
Rr386226	regulatory region 386226	55 bp upstream
Tssr102357	transcription start site region 102357	312 bp upstream
Tssr102358	transcription start site region 102358	335 bp upstream
Tssr102359	transcription start site region 102359	1093 bp upstream
Tssr102360	transcription start site region 102360	1357 bp upstream
Tssr102361	transcription start site region 102361	1563 bp upstream
Tssr102362	transcription start site region 102362	1609 bp upstream