rs29457494 SNP Detail

Summary

• ID
  rs29457494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCGCCGC CACATGTAGA
  TCAGCGGTAT CCATGGAGCC AGGAAGATCC TCCCTCCACA GGGAAAGGGC ACTGTTCAGC
  CCCGTAAGGT TGAAGGCGGA GCCTGAGAGT ACCAACTGGT TTGGTGGAAG TGAGGTCACC
  AGAAGCCCGG TTCTGCCAGA GTTTGACTCT GGGAATGCCA GGGCCACCAA GTTCCCACTT
  Y
  CTGCCAGTGC CAAATTGGCA TCGGTAAGCA GTAGTAGAGC CCCTGGCAGC AAGTTGGAAC
  AGGTGACCTC TGCTCTTAGG CACAAACCCA ATTTGAACTT TGTGCCCTGT CCATTGATTC
  ACCATTCATC CCCCACCCCC ATCCCCACCC TTCCACCACC ACCCCCTCCG CTCCCGCCCC
  CGCCTCCCAT TCTTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss38824402	mCV22627804	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29457494					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	905 bp distal
Cpgi4110	CpG island 4110	100 bp distal
Gm72084	predicted gene, 72084	912 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr403111	regulatory region 403111	1871 bp downstream
Rr459783	regulatory region 459783	1883 bp distal
Rr459784	regulatory region 459784	422 bp distal
Rr459785	regulatory region 459785	644 bp distal
Rr459786	regulatory region 459786	1627 bp proximal
Tssr3727	transcription start site region 3727	1863 bp downstream
Tssr105840	transcription start site region 105840	1886 bp downstream
Tssr105841	transcription start site region 105841	1851 bp downstream
Tssr105842	transcription start site region 105842	1821 bp downstream
Tssr105843	transcription start site region 105843	1815 bp downstream
Tssr105844	transcription start site region 105844	1785 bp downstream