rs29457717 SNP Detail

Summary

• ID
  rs29457717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94967498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG ACCTCGGCTA GGTGGAGGAT
  Y
  TAGAACGGCA AGCCCTCGAT CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38824812	mCV24742026	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss132653036	ENSMUSSNP3238839	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29457717					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94967498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	56 bp upstream
Tssr104346	transcription start site region 104346	273 bp upstream
Tssr110254	transcription start site region 110254	83 bp upstream
Tssr110255	transcription start site region 110255	17 bp upstream
Tssr110256	transcription start site region 110256	within coordinates
Tssr110257	transcription start site region 110257	131 bp downstream