rs29457814 SNP Detail

Summary

• ID
  rs29457814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102210686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACTCCATC TGCTTGCCCG ACTCCTCGCT CTCCTGTCGG GGCGGGCAAG GCAGCTTGAG
  GCCGGAGGGG GATCTGTGAG GGATCCTGCC TGCTCCCTCT CCCATTGCTC CATCCTTGCT
  GTCTCCTGCC TCCTCCTCTC CTGCGTTTTT CCAACTCTCC CCTGTCGCCA CTGGTGTGTG
  TCTGTGTGCG CAGGTTTTCT CTCTCTCTCT TTTTTTTTTT TTTTTTATTG CTTTGCTTTT
  GCAACCCTGA AGCTAAAGCG GGATGGGGGC GAAGGGGAAT GTTACAAAAA AGAAAAAGGG
  R
  AAAAAAAAAG CCTCCTAGGT TTGCAACGTA TGAAAATACC CGGGAAGTAC CCCGCCTCGT
  TTGGGTCTCG GTGCCCGGCG AGGGCCTTCC GGATTTCAGA GCCAGTCTTG GGTTGTTCTC
  GATGTCCCCC ATCTTCACCG GCCGTATGAT CCGAGGAGTT AAGAACAAAA AGTTCACCCC
  TGTGTCGTAG TAGGGTGTCA GTGGGAGTTG GGGAGGTTTT TCAAGAAGCA GCGGAACGGC
  CATCCCTTTA CCCTGGGCTT CAGTAACTAG GCCGCGACCG GGGTAGGGGT TTAGAGCAAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38826901	mCV23672154	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss132735543	ENSMUSSNP5208779	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29457814					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102210686 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111030	transcription start site region 111030	1983 bp upstream
Tssr111031	transcription start site region 111031	1799 bp upstream
Tssr111032	transcription start site region 111032	856 bp upstream
Tssr111033	transcription start site region 111033	755 bp upstream
Tssr111034	transcription start site region 111034	511 bp upstream
Tssr111035	transcription start site region 111035	414 bp upstream
Tssr111036	transcription start site region 111036	1 bp upstream
Tssr111037	transcription start site region 111037	405 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	118 bp upstream