rs29458348 SNP Detail

Summary

• ID
  rs29458348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11507231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG GGAGGAAATC AGGGGTTATA
  Y
  TTCCAAATTA CTCCTTGTAA CAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38824520	mCV24438523	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss131686836	ENSMUSSNP5236464	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29458348					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11507231 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	179 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	within coordinates
Rr442717	regulatory region 442717	within coordinates
Rr442718	regulatory region 442718	80 bp proximal
Rr442719	regulatory region 442719	198 bp proximal
Rr442720	regulatory region 442720	612 bp proximal
Rr442721	regulatory region 442721	725 bp proximal
Rr442722	regulatory region 442722	1321 bp proximal
Tssr100349	transcription start site region 100349	157 bp upstream
Tssr100350	transcription start site region 100350	170 bp upstream
Tssr100351	transcription start site region 100351	701 bp upstream
Tssr100352	transcription start site region 100352	776 bp upstream