rs29458394 SNP Detail

Summary

• ID
  rs29458394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70409632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGCTCCT TCAGAGAAGC CCAGTAAGCT TCCTGGGGAA
  TTGAAATTTT TATTCCCAAG GTTTCCAGAC CTCTCGGCAA GAATGTAAAA AAAAAAAAAA
  R
  AGAGAGAGAG AGCCTAAAGC CCCATCCTCG AGCCTTAACA AGTAAGACGT ATTGGGCAAC
  TGTGGTCAGC TTTCCACTTG GAATGCTTTC ACATGCGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38826318	mCV24082077	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29458394					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70409632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	1127 bp proximal
Gltpd2	glycolipid transfer protein domain containing 2	403 bp upstream
Gm12317	predicted gene 12317	763 bp upstream
Rr450317	regulatory region 450317	1962 bp distal
Rr450318	regulatory region 450318	236 bp proximal
Rr450319	regulatory region 450319	1413 bp proximal
Tssr102724	transcription start site region 102724	350 bp upstream
Tssr102725	transcription start site region 102725	362 bp upstream
Tssr102726	transcription start site region 102726	377 bp upstream
Tssr102727	transcription start site region 102727	813 bp upstream