rs29458410 SNP Detail

Summary

• ID
  rs29458410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6019278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGGGGAACAC ATCAGTCCAT TTAGGACGAT GTGGTAGGAA TACAAGGTAG TGGCAGTAGT
  AGTGGTGATG GCAGTGATAT TAGCAGTATT GGTGGGGCAG TGGTGGTAAA GGTATTGGTG
  GTGGTCATGG CAACAACAGA CTGACCAGCT TTGGATCACA AAGCTAGTCC AGTCTTGGCA
  TCCAGATCTG TCTTCATAAC TAGTACCTTC AACTATAATG CTGAAGACCT CTGGCGCTCT
  CCGTGCAGTT GCTGTGTACC AGCTGTGTGC ATGGACTTGC CTAGGCACAG ACTCACACCA
  R
  AGAATGACAA GGTAGTTGTG CCTACAGGGC TTATACGTAC AAATTGACAA GAGCACAGAA
  CGGCTTTCCA CAATGATGCT TGTCACACAA TAATGCCCAC CCCTATGATG ACTGCTTCTT
  TTCCACAATC TCAGTGCCTC CAATTACCCA CTCCCCCAAT ACTACATGAT ACATTGTGGA
  AAGAAACAAT CCTTATGTTT TCAATCACAT GCAATTGTGG GTAGAGCATG GTTGCACTCC
  ATTCTGCTCT GGCTTTGAAT TAGCCTTTGG TCCTGCATCT CCATGCTATG TTGGATGCAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38825818	mCV22808071	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss131641305	ENSMUSSNP5123738	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29458410					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6019278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2552	CpG island 2552	818 bp distal
Gm74282	predicted gene, 74282	213 bp upstream
Rr442232	regulatory region 442232	749 bp distal
Rr442233	regulatory region 442233	248 bp distal
Rr442234	regulatory region 442234	126 bp distal