rs29458499 SNP Detail

Summary

• ID
  rs29458499
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84070070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGC ATAGGCTAGC CTCCACTACT
  S
  TGAAGGCAGT GGACAGGCAG GACAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss38827119	mCV24638958	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss132477371	ENSMUSSNP6295335	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323769371	CHEV_11_83992746	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29458499					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84070070 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	within coordinates
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	185 bp proximal
Rr453132	regulatory region 453132	732 bp proximal
Tssr103797	transcription start site region 103797	1591 bp downstream
Tssr103798	transcription start site region 103798	367 bp upstream
Tssr103799	transcription start site region 103799	414 bp upstream
Tssr103800	transcription start site region 103800	548 bp upstream
Tssr103801	transcription start site region 103801	608 bp upstream
Tssr103802	transcription start site region 103802	622 bp upstream
Tssr103803	transcription start site region 103803	1065 bp upstream