rs29458565 SNP Detail

Summary

• ID
  rs29458565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CTTCTCTCTG TGCTGTAGAT
  Y
  CCACCCAATG ACCCTCGAAT CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38826524	mCV22737730	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132513003	ENSMUSSNP2230012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323773681	CHEV_11_87610828	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29458565					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688152 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1154 bp distal
Rr453905	regulatory region 453905	1100 bp distal
Tssr3633	transcription start site region 3633	987 bp downstream
Tssr103993	transcription start site region 103993	1534 bp downstream
Tssr103994	transcription start site region 103994	1452 bp downstream
Tssr103995	transcription start site region 103995	1283 bp downstream
Tssr103996	transcription start site region 103996	1233 bp downstream
Tssr103997	transcription start site region 103997	1063 bp downstream
Tssr103998	transcription start site region 103998	918 bp downstream
Tssr103999	transcription start site region 103999	within coordinates
Tssr104000	transcription start site region 104000	102 bp upstream
Tssr104001	transcription start site region 104001	132 bp upstream
Tssr104002	transcription start site region 104002	158 bp upstream
Tssr104003	transcription start site region 104003	231 bp upstream
Tssr104004	transcription start site region 104004	257 bp upstream
Tssr104005	transcription start site region 104005	281 bp upstream
Tssr109976	transcription start site region 109976	892 bp upstream
Tssr109977	transcription start site region 109977	19 bp downstream
Tssr109978	transcription start site region 109978	47 bp downstream
Tssr109979	transcription start site region 109979	99 bp downstream
Tssr109980	transcription start site region 109980	287 bp downstream