rs29458579 SNP Detail

Summary

• ID
  rs29458579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC GTGAAGGGGT CTTGGGGTGG
  R
  TGTCCTACAG AGTGGAAGGA ATTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38824136	mCV22780212	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132355541	ENSMUSSNP6740403	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323729412	CHEV_11_69221142	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29458579					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	879 bp proximal
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	334 bp proximal
Rr402670	regulatory region 402670	955 bp upstream
Rr402671	regulatory region 402671	1719 bp upstream
Tssr3543	transcription start site region 3543	1040 bp downstream
Tssr102455	transcription start site region 102455	762 bp downstream
Tssr102456	transcription start site region 102456	1271 bp upstream
Tssr102457	transcription start site region 102457	1641 bp upstream
Tssr108660	transcription start site region 108660	1729 bp upstream
Tssr108661	transcription start site region 108661	870 bp upstream
Tssr108662	transcription start site region 108662	20 bp upstream
Tssr108663	transcription start site region 108663	within coordinates
Tssr108664	transcription start site region 108664	173 bp downstream
Tssr108665	transcription start site region 108665	918 bp downstream
Tssr108666	transcription start site region 108666	1506 bp downstream
Tssr108667	transcription start site region 108667	1752 bp downstream
Tssr108668	transcription start site region 108668	1773 bp downstream
Tssr108669	transcription start site region 108669	1788 bp downstream
Tssr108670	transcription start site region 108670	1907 bp downstream