rs29459197 SNP Detail

Summary

• ID
  rs29459197
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102835949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCAGAGGT GAGAGCGCAG GGAGCTGAGA ACCCAGGGTG
  GGTGGTTCCA AGGACACCGC TGTGCATCCG TGTCTCAGAC ACGTGCACAC CAGCTCCCTA
  W
  TTTCTAGGAT ACTGGAGGAG CTGTACCTGG AGACTTTAAG GAGGGGAGTT TCCATCACTC
  CGCCCCGCCT CTAGAGGAAA CTTTTTCCCG GGAGGCGCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38824148	mCV22882362	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss132740421	ENSMUSSNP5563785	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29459197					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102835949 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	within coordinates
Cpgi3944	CpG island 3944	151 bp proximal
Rr457458	regulatory region 457458	1555 bp proximal
Tssr111125	transcription start site region 111125	888 bp downstream
Tssr111126	transcription start site region 111126	1425 bp downstream
Tssr111127	transcription start site region 111127	1578 bp downstream
Tssr111128	transcription start site region 111128	1618 bp downstream
Tssr111129	transcription start site region 111129	1646 bp downstream