rs29459598 SNP Detail

Summary

• ID
  rs29459598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70408551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATACTTT AAAAAAAATT TTTTAAACGA TTTTTAATGT
  TGTTCACAGA ACAAGGCTTG ATTTGATTTT TATTATTTTA AAAAGCTTAA TGTTTACTTC
  R
  TTTTCTGACT CTGTATTTGT GCTGTCAACA CTTACACACT GGTTTTCTGC TCCTCAATAA
  GGAAAGAATG CCAGATCCTG TCATGGGCAT ATTTAGCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38827923	mCV24082075	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss323735933	CHEV_11_70331227	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29459598					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70408551 () rs orientation: forward

Symbol	Name	Function Class
Gltpd2	glycolipid transfer protein domain containing 2	1484 bp upstream
Gm12317	predicted gene 12317	within coordinates
Rr450316	regulatory region 450316	1483 bp distal
Rr450317	regulatory region 450317	881 bp distal
Rr450318	regulatory region 450318	1317 bp proximal
Tssr102724	transcription start site region 102724	1431 bp upstream
Tssr102725	transcription start site region 102725	1443 bp upstream
Tssr102726	transcription start site region 102726	1458 bp upstream
Tssr102727	transcription start site region 102727	1894 bp upstream